Are plankton nets a thing of the past? An assessment of in situ imaging of zooplankton for large-scale ecosystem assessment and policy decision-making

Zooplankton are fundamental to aquatic ecosystem services such as carbon and nutrient cycling. Therefore, a robust evidence base of how zooplankton respond to changes in anthropogenic pressures, such as climate change and nutrient loading, is key to implementing effective policy-making and management measures. Currently, the data on which to base this evidence, such as long time-series and large-scale datasets of zooplankton distribution and community composition, are too sparse owing to practical limitations in traditional collection and analysis methods. The advance of in situ imaging technologies that can be deployed at large scales on autonomous platforms, coupled with artificial intelligence and machine learning (AI/ML) for image analysis, promises a solution. However, whether imaging could reasonably replace physical samples, and whether AI/ML can achieve a taxonomic resolution that scientists trust, is currently unclear. We here develop a roadmap for imaging and AI/ML for future zooplankton monitoring and research based on community consensus. To do so, we determined current perceptions of the zooplankton community with a focus on their experience and trust in the new technologies. Our survey revealed a clear consensus that traditional net sampling and taxonomy must be retained, yet imaging will play an important part in the future of zooplankton monitoring and research. A period of overlapping use of imaging and physical sampling systems is needed before imaging can reasonably replace physical sampling for widespread time-series zooplankton monitoring. In addition, comprehensive improvements in AI/ML and close collaboration between zooplankton researchers and AI developers are needed for AI-based taxonomy to be trusted and fully adopted. Encouragingly, the adoption of cutting-edge technologies for zooplankton research may provide a solution to maintaining the critical taxonomic and ecological knowledge needed for future zooplankton monitoring and robust evidence-based policy decision-making

Seasonal variation of zooplankton community structure and trophic position in the Celtic Sea: A stable isotope and biovolume spectrum approach

Zooplankton on continental shelves represent an important intermediary in the transfer of energy and matter from phytoplankton to the wider ecosystem. Their taxonomic composition and trophic interactions with phytoplanktonvaryinspaceandtime, andinterpreting theimplicationsofthis constantlyevolvinglandscaperemainsamajorchallenge.Herewecombineplanktontaxonomicdatawiththeanalysisofbiovolumespectraand stableisotopestoprovideinsightsintothetrophicinteractionsthatoccurinashelfseaecosystem(CelticSea) across the spring-summer-autumn transition. Biovolume spectra captured the seasonal development of the zooplankton community well, both in terms of total biomass and trophic positioning, and matched trophic positionsestimatedbystableisotopeanalysis.InearlyApril,largemicroplankton(63–200µm)occupiedhigher trophic positions than mesozooplankton (>200µm), likely reflecting the predominance of nanoplankton (2–20µm) that were not readily available to mesozooplanktongrazers. Biomass and number of trophic levels increasedduringthespringbloomaselevatedprimaryproductionallowedforahigherabundanceofpredatory species.DuringJuly,theplanktonassemblageoccupiedrelativelyhightrophicpositions,indicatingimportant links to the microbial loop and the recycling of organic matter. The strong correlation between biomass and communitytrophiclevelacrossthestudysuggeststhattheCelticSeaisarelativelyenclosedandpredominantly energy-limited ecosystem. The progression of the zooplankton biomass and community structure within the centralshelfregionwasdifferenttothatattheshelf-break,potentiallyreflectingincreasedpredatorycontrolof copepodsby macrozooplanktonandpelagicfishesattheshelfbreak.Wesuggestthatthecombinationofsize spectra and stable isotope techniques are highly complementary and useful for interpreting the seasonal progressionoftrophicinteractionsintheplankton

Coccolithophore calcification fails to deter microzooplankton grazers.

Phytoplankton play a central role in the regulation of global carbon and nutrient cycles, forming the basis of the marine food webs. A group of biogeochemically important phytoplankton, the coccolithophores, produce calcium carbonate scales that have been hypothesized to deter or reduce grazing by microzooplankton. Here, a meta-analysis of mesocosm-based experiments demonstrates that calcification of the cosmopolitan coccolithophore, Emiliania huxleyi, fails to deter microzooplankton grazing. The median grazing to growth ratio for E. huxleyi (0.56 � 0.40) was not significantly different among non-calcified nano- or picoeukaryotes (0.71 � 0.31 and 0.55 � 0.34, respectively). Additionally, the environmental concentration of E. huxleyi did not drive preferential grazing of non-calcified groups. These results strongly suggest that the possession of coccoliths does not provide E. huxleyi effective protection from microzooplankton grazing. Such indiscriminate consumption has implications for the dissolution and fate of CaCO3 in the ocean, and the evolution of coccoliths

Vertical imbalance in organic carbon budgets is indicative of a missing vertical transfer during a phytoplankton bloom near South Georgia (COMICS)

The biological carbon pump, driven principally by the surface production of sinking organic matter and its subsequent remineralization to carbon dioxide (CO2) in the deep ocean, maintains atmospheric CO2 concentrations around 200 ppm lower than they would be if the ocean were abiotic. One important driver of the magnitude of this effect is the depth to which organic matter sinks before it is remineralised, a parameter we have limited confidence in measuring given the difficulty involved in balancing sources and sinks in the ocean's interior. One solution to this imbalance might be a temporal offset in which organic carbon accumulates in the mesopelagic zone (100–1000 m depth) early in the productive season before it is consumed later. Here, we develop a novel accounting method to address non-steady state conditions by estimating fluxes of particulate organic matter into, and accumulation within, distinct vertical layers in the mesopelagic zone using high-resolution spatiotemporal vertical profiles. We apply this approach to a time series of measurements made during the declining phase of a large diatom bloom in a low-circulation region of the Southern Ocean downstream of South Georgia. Our data show that the major export event led to a significant accumulation of organic matter in the upper mesopelagic zone (100–200 m depth) which declined over the following weeks, implying that temporal offsets need to be considered when compiling budgets. However, even when accounting for this accumulation, a mismatch in the vertically resolved organic carbon budget remained, implying that there are likely widespread processes that we do not yet understand that redistribute material vertically within the mesopelagic zone

Depth-dependent mycoplankton glycoside hydrolase gene activity in the open ocean—evidence from the Tara Oceans eukaryote metatranscriptomes

6 months embargo applie

Vertical imbalance in organic carbon budgets is indicative of a missing vertical transfer during a phytoplankton bloom near South Georgia (COMICS)

The biological carbon pump, driven principally by the surface production of sinking organic matter and its subsequent remineralization to carbon dioxide (CO2) in the deep ocean, maintains atmospheric CO2 concentrations around 200 ppm lower than they would be if the ocean were abiotic. One important driver of the magnitude of this effect is the depth to which organic matter sinks before it is remineralised, a parameter we have limited confidence in measuring given the difficulty involved in balancing sources and sinks in the ocean's interior. One solution to this imbalance might be a temporal offset in which organic carbon accumulates in the mesopelagic zone (100–1000 m depth) early in the productive season before it is consumed later. Here, we develop a novel accounting method to address non-steady state conditions by estimating fluxes of particulate organic matter into, and accumulation within, distinct vertical layers in the mesopelagic zone using high-resolution spatiotemporal vertical profiles. We apply this approach to a time series of measurements made during the declining phase of a large diatom bloom in a low-circulation region of the Southern Ocean downstream of South Georgia. Our data show that the major export event led to a significant accumulation of organic matter in the upper mesopelagic zone (100–200 m depth) which declined over the following weeks, implying that temporal offsets need to be considered when compiling budgets. However, even when accounting for this accumulation, a mismatch in the vertically resolved organic carbon budget remained, implying that there are likely widespread processes that we do not yet understand that redistribute material vertically within the mesopelagic zone

The Sedimentary Record of MOSSFA Events in the Gulf of Mexico: A Comparison of the \u3cem\u3eDeepwater Horizon\u3c/em\u3e (2010) and Ixtoc 1 (1979) Oil Spills

Marine Oil Snow Sedimentation and Flocculent Accumulation (MOSSFA) refers to the process of formation, sinking, and seafloor deposition of oil-contaminated marine snow and oil-mineral aggregates. MOSSFA was well documented in the northern Gulf of Mexico (GoM) in the aftermath of the Deepwater Horizon(DWH 2010) and likely occurred in the southern GoM during Ixtoc 1 (1979–1980). This chapter introduces Part IV: Oil Spill Records in Deep Sea Sediments and addresses a series of questions regarding MOSSFA in the sedimentary record: What were the characteristics of MOSSFA sedimentary inputs? What was the extent of MOSSFA on the seafloor? What postdepositional processes took place as a result of MOSSFA? Can MOSSFA be preserved in the sedimentary record? MOSSFA sedimentary inputs were comprised of three main components (biogenic, lithogenic, and petrogenic), many of which were surface derived. MOSSFA resulted in a four- to ten fold increase in bulk sediment accumulation rates, a two- to three fold increase in oil-derived hydrocarbon concentrations, a two- to three-order of magnitude increase in Corexit 9500A dispersant concentration, and two- to three fold increases in surface-derived biotic material (e.g., planktic foraminifera, diatoms). Estimates of the total spatial extent of MOSSFA on the seafloor of the northern GoM range from 1030 to 35,425 km2, accounting for between 3.7% and 14.4% of the total petroleum released during DWH. Increased microbial respiration of organic carbon caused depleted surface sediment oxygen, intensifying reducing conditions up to 3 years following DWH. Multiple proxies provided evidence of multi-year preservation of both oil residue in the sediments associated with DWH, MOSSFA, and the sedimentary event in the geologic record. Despite confounding factors in the southern GoM including regional events (e.g., volcanoes, hurricanes) and complex hydrocarbon backgrounds (e.g., natural seeps, oil, and gas infrastructure), multiple sedimentary proxies have provided evidence of degraded Ixtoc 1 oil-residue input and the MOSSFA sedimentary event preserved in the geologic record greater than 35 years after Ixtoc 1. Federal and international policies can be benefitted by incorporating MOSSFA with regard to response strategies, weighing the ecological trade-off between oiled coastlines and offshore benthic environments